PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00078601001
Common NameGSBRNA2T00078601001, LOC106399861
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 377aa    MW: 42385.1 Da    PI: 7.2099
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00078601001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.1e-32195249155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  GSBRNA2T00078601001 195 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 249
                          68****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.48E-17194249IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-28194250IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-23195250IPR006447Myb domain, plants
PfamPF002491.4E-8199248IPR001005SANT/Myb domain
PfamPF143793.2E-20279326IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDNINFETSN ASQGSRLHLH SQSQPPQLFN LQDVNMNHYN QSSPWTSETF SGYTPYDCTA  60
NQSLSVQCSS SKPNHALFHP YHHDQSSDHP SEDQSQSMVP MQLLQDQYLK PLYQKSCAND  120
FAATNASSSS YSLSFDASQD PQELCRRTYS TSNVTQLHFS SSHHHAKQTH PRFSSHSFSA  180
HGGSMAPNCG TVGNKTRIRW TQDLHEKFVE CVNRLGGADK ATPKAILKLM DSEGLTIFHV  240
KSHLQKYRIA KYIPDYQEGK FEKGSCSKEL SQLDTKTGVQ IKEALQLQLD VQRHLHEQLE  300
IQRNLQLRIE EQGKQLKIMI EQQQKTKECL LLKSPNAEAS LSLSASDHSP PPFSIQDAEA  360
LMLKTYGDTQ SQSKIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00078601001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013695761.10.0PREDICTED: transcription repressor KAN1-like
RefseqXP_013695760.10.0PREDICTED: transcription repressor KAN1-like
RefseqXP_013619400.10.0PREDICTED: transcription repressor KAN1-like
RefseqXP_013619399.10.0PREDICTED: transcription repressor KAN1-like
TrEMBLA0A078FP180.0A0A078FP18_BRANA; BnaC02g01850D protein
TrEMBLA0A0D3AI070.0A0A0D3AI07_BRAOL; Uncharacterized protein
STRINGBra028717.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.11e-179G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]